Computational biology PhD researcher. Interested in science, software development, and machine learning. I write about medical research at BioSky.co and contribute content to a variety of additional publications.CVAbout
I wrote a few quick bullet points down from the article “8 Tactics to Combat Imbalanced Classes in Your Machine Learning Dataset” for future reference.
- Imbalanced datasets occur when you have a class that occurs much more infrequently than the others.
- If a model ignores the class, it can still achieve a high classification accuracy, but that’s not the result we want
- Make sure you use a confusion matrix to ensure that you’re getting acceptable accuracy for all your classes
- One potential solution to this problem is to collect more data
- Resampling your dataset (can be random or non-random – stratified):
- Add copies of underrepresented classes (oversampling/sampling with replacement). Useful if you don’t have much data – 10s of thousands or less.
- Delete instances of classes that occur frequently (undersampling). Handy to use if you have a lot of data – 10s-100s of thousands of instances
- Try different algorithms: decision trees can perform well on imbalanced datasets
- Penalised models: Extra penalties for misclassifying minority class. Examples of these algorithms could include penalized-SVM and penalized-LDA.
- There are areas of research dedicated to imbalanced datasets: can look into anomaly detection and change detection.
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Computational biology PhD candidate at the Australian National University. I love writing (both articles and software), learning more about the world around us, and beekeeping. I also write for BioSky.co
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